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Sadegh, S., M. Nazarieh, C. Spaniol, and V. Helms, "Randomization Strategies Affect Motif Significance Analysis in TF-miRNA-Gene Regulatory Networks", J. Integr. Bioinform, vol. 14 (2), 2017.
Sadjadi, Z., and M. R. Shaebani, "Orientational Memory of Active Particles in Multistate non-Markovian Processes", Phys. Rev. E, vol. 104, pp. 054613, 2021.
Sadjadi, Z., R. Zhao, M. Hoth, B. Qu, and H. Rieger, "Migration of Cytotoxic T Lymphocytes in 3D Collagen Matrices", Biophysical Journal, vol. 119, pp. 2141-2152, 2020.
Sadjadi, Z., D. Vesperini, A. M. Laurent, L. Barnefske, E. Terriac, F. Lautenschläger, and H. Rieger, "Amoeboid Cell Migration through Regular Arrays of Micropillars under Confinement", Biophysical Journal, 2022.
Sadjadi, Z., R. M Shaebani, H. Rieger, and L. Santen, "Persistent-random-walk approach to anomalous transport of self-propelled particles", Physical Review E, vol. 91, pp. 062715, 2015.
Sadjadi, Z., and H. Rieger, "Topotaxis of Active Particles Induced by Spatially Heterogeneous Sliding along Obstacles", Phys. Rev. Research, vol. 6, pp. 013178, 2024.
Sander, M., J. Flesch, and A. Ott, "Using cell monolayer rheology to probe average single cell mechanical properties", Biorheology, vol. 12, 2015.
Sander, M., H. Dobicki, and A. Ott, "Large Amplitude Oscillatory Shear Rheology of Living Fibroblasts: Path-Dependent Steady States", Biophysical Journal, vol. 113, pp. 1561-1573, 2017.
Sandoval-Perez, A., K. Pluhackova, and R. A. Böckmann, "A Critical Comparison of Biomembrane Force Fields: Protein-Lipid Interactions at the Membrane Interface", Journal of Chemical Theory and Computation, 2017.
Sankaran, S., and A. del Campo, "Optoregulated Protein Release from an Engineered Living Material", Advanced biosystems, vol. 3, issue 2, pp. 1800312, 2019.
Sankaran, S., J. Becker, C. Wittmann, and A. del Campo, "Optoregulated Drug Release from an Engineered Living Material: Self‐Replenishing Drug Depots for Long‐Term, Light‐Regulated Delivery", Small, vol. 15, pp. 1804717, 2019.
Sankaran, S., S. Zhao, C. Muth, J. Paez, and A. del Campo, "Toward Light-Regulated Living Biomaterials", Adv Sci, vol. 5, 2018.
Sarkar, A., H. Rieger, and R. Paul, "Search and Capture Efficiency of Dynamic Microtubules for Centrosome Relocation during IS Formation", Biophysical Journal, vol. 116, pp. 2079 - 2091, 2019.
Saul, S., H. Stanisz, C. S. Backes, E. C. Schwarz, and M. Hoth, "How ORAI and TRP channels interfere with each other: Interaction models and examples from the immune system and the skin", European Journal of Pharmacology, vol. 739, pp. 49 - 59, 2014.
Saul, S., C. S. Gibhardt, B. Schmidt, A. Lis, B. Pasieka, D. Conrad, P. Jung, R. Gaupp, B. Wonnenberg, E. Diler, et al., "A calcium-redox feedback loop controls human monocyte immune responses: The role of ORAI Ca2+ channels", Science Signaling, vol. 9, pp. ra26–ra26, 2016.
Schenkelberger, M., S. Shanak, M. Finkler, E. G. Worst, V. Noireaux, V. Helms, and A. Ott, "Expression regulation by a methyl-CpG binding domain in an E. coli based, cell-free TX-TL system", Physical Biology, vol. 14, pp. 026002, 2017.
Schenkelberger, M., C. Trapp, T. Mai, V. Giri, M. Mohammadi-Kambs, and A. Ott, "Ultrahigh molecular recognition specificity of competing DNA oligonucleotide strands in thermal equilibrium: a cooperative transition to order", New J. Phys., vol. 23, pp. 043044, 2021.
Schestakow, A., C. Bauer, and M. Hannig, "Ultrastructure of the dentin pellicle and the impact of erosion", Caries Res , vol. 56, pp. 488-495, 2022.
Schestakow, A., and M. Hannig, "Effects of experimental agents containing tannic acid or chitosan on the bacterial biofilm formation in-situ", Biomolecules, vol. 10, pp. E1315, 2020.
Schestakow, A., M. S. Guth, T. A. Eisenmenger, and M. Hannig, "Evaluation of anti-biofilm activity of mouthrinses containing tannic acid or chitosan on dentin in situ.", Molecules, vol. 26, pp. 1351, 2021.
Schestakow, A., Y. Nekrashevych, W. Hoth-Hannig, and M. Hannig, "Influence of periodic polyphenol treatment on the anti-erosive potential of the acquired enamel pellicle – a qualitative exploratory study", J Dent , vol. 124, pp. 104236, 2022.
Schestakow, A., N. Pütz, M. S. Guth, T. A. Eisenmenger, J. Dudek, and M. Hannig, "Influence of a hydroxyapatite suspension on 48-h dental biofilm formation in-situ", Arch. Oral. Biol., vol. 136, pp. 105388 , 2022.
Schmidt, B., D. Alansary, I. Bogeski, B. A. Niemeyer, and H. Rieger, "Reaction-diffusion model for STIM-ORAI interaction: The role of ROS and mutations", Journal of Theoretical Biology, vol. 470, pp. 64 - 75, 2019.
Schoppmeyer, R., R. Zhao, M. Hoth, and B. Qu, "Light-sheet Microscopy for Three-dimensional Visualization of Human Immune Cells", J Vis Exp., vol. 13, pp. e57651, 2018.
Schoppmeyer, R., R. Zhao, H. Cheng, M. Hamed, C. Liu, X. Zhou, EC. Schwarz, Y. Zhou, A. Knörck, G. Schwär, et al., "Human profilin 1 is a negative regulator of CTL mediated cell-killing and migration", Eur. J. Immunol., vol. 47, pp. 1562-1572, 2017.
Schu, M., E. Terriac, M. Koch, S. Paschke, F. Lautenschläger, and D. A. D. Flormann, "Scanning electron microscopy preparation of the cellular actin cortex: A quantitative comparison between critical point drying and hexamethyldisilazane drying", PLOS ONE, vol. 16, pp. e0254165, 2021.
Schwarz, K., Y. Schröder, and H. Rieger, "Numerical analysis of homogeneous and inhomogeneous intermittent search strategies", Phys. Rev. E, vol. 94, pp. 042133, 2016.
Schwarz, K., and H. Rieger, "Efficient kinetic Monte Carlo method for reaction–diffusion problems with spatially varying annihilation rates", J. Comp. Phys., vol. 237, pp. 396 - 410, 2013.
Schwarz, K., Y. Schröder, B. Qu, M. Hoth, and H. Rieger, "Optimality of spatially inhomogeneous search strategies", Phys. Rev. Lett., vol. 117, pp. 068101, 2016.
Schwarz, E. C., B. Qu, and M. Hoth, "Calcium, cancer and killing: The role of calcium in killing cancer cells by cytotoxic T lymphocytes and natural killer cells", BBA Molecular Cell Research, vol. 1833, issue 7, pp. 1603-1611, 2013.
Shaaban, A., M. Dhara, W. Frisch, A. Harb, AH. Shaib, U. Becherer, D. Bruns, and R. Mohrmann, "The SNAP-25 linker supports fusion intermediates by local lipid interactions", eLife, vol. 8, pp. e41720, 2019.
M. Shaebani, R., L. Stankevicins, D. Vesperini, M. Urbanska, D. A. D. Flormann, E. Terriac, A. K. B. Gad, F. Cheng, J. E. Eriksson, and F. Lautenschläger, "Effects of vimentin on the migration, search efficiency, and mechanical resilience of dendritic cells", Biophysical Journal, vol. 121, pp. 3950-3961, 2022.
Shaebani, R. M., and H. Rieger, "Transient Anomalous Diffusion in Run-and-Tumble Dynamics", Frontiers in Physics, vol. 7, pp. 120, 2019.
M Shaebani, R., Z. Sadjadi, I. M. Sokolov, H. Rieger, and L. Santen, "Anomalous diffusion of self-propelled particles in directed random environments", Physical Review E, vol. 90, pp. 030701(R), 2014.
M Shaebani, R., A. Pasula, A. Ott, and L. Santen, "Tracking of plus-ends reveals microtubule functional diversity in different cell types", Scientific Reports, vol. 6, pp. 30285, 2016.
Shaebani, M. R., A. Wysocki, R. G. Winkler, G. Gompper, and H. Rieger, "Computational models for active matter", Nature Reviews Physics, vol. 2, pp. 181–199, 2020.
Shaebani, M. R., R. Jose, C. Sand, and L. Santen, "Unraveling the Structure of Treelike Networks from First-Passage Times of Lazy Random Walkers", Phys. Rev. E , vol. 98, pp. 042315 , 2018.
M. Shaebani, R., J. Najafi, A. Farnudi, D. Bonn, and M. Habibi, "Compaction of quasi-one-dimensional elastoplastic materials", Nature Communications , vol. 8, pp. 15568, 2017.
M. Shaebani, R., H. Rieger, and Z. Sadjadi, "Kinematics of persistent random walkers with two distinct modes of motion", Phys. Rev. E, vol. 106, pp. 034105, Sep, 2022.
Shaebani, M. R., R. Jose, L. Santen, L. Stankevicins, and F. Lautenschläger, "Persistence-Speed Coupling Enhances the Search Efficiency of Migrating Immune Cells", Phys. Rev. Lett., vol. 125, pp. 268102, 2020.
Shaebani, M. R., M. Piel, and F. Lautenschläger, "Distinct Speed and Direction Memories of Migrating Cells Diversify Their Possible Search Strategies", Biophys. J., vol. 121, pp. 4099-4108, 2022.
Shanak, S., and V. Helms, "Hydration properties of natural and synthetic DNA sequences with methylated adenine or cytosine bases in the R.DpnI target and BDNF promoter studied by molecular dynamics simulations", The Journal of Chemical Physics, vol. 141, pp. 22D512, 2014.
Shanak, S., and V. Helms, "DNA methylation and the core pluripotency network", Developmental Biology, vol. 464, pp. 145-160, 2020.
Shanak, S., O. Ulucan, and V. Helms, "Methylation-targeted specificity of the DNA binding proteins R.DpnI and MeCP2 studied by molecular dynamics simulations", Journal of Molecular Modeling, vol. 23, pp. 152, 2017.
Simeoni, L., and I. Bogeski, "Redox regulation of T-cell receptor signaling", Biological Chemistry, vol. 396, issue 5, pp. 555-568, 05/2015.
Slowik, E. Jasmin, K. Stankoska, N. Nguyen Bui, B. Pasieka, D. Conrad, J. Zapp, M. Hoth, I. Bogeski, and R. Kappl, "The calcium channel modulator 2-APB hydrolyzes in physiological buffers and acts as an effective radical scavenger and inhibitor of the NADPH oxidase 2", Redox Biology, vol. 61, pp. 102654, 2023.
Sonntag, M., M. Blosa, S. Schmidt, K. Reimann, K. Blum, T. Eckrich, G. Seeger, D. Hecker, B. Schick, T. Arendt, et al., "Synaptic coupling of inner ear sensory cells is controlled by brevican-based extracellular matrix baskets resembling perineuronal nets", BMC Biol., vol. 16, 2018.
Spengler, C., F. Nolle, N. Thewes, B. Wieland, P. Jung, M. Bischoff, and K. Jacobs, "Using Knock-Out Mutants to Investigate the Adhesion of Staphylococcus aureus to Abiotic Surfaces", Int. J. Mol. Sci., vol. 22, pp. 11952, 2021.
Spengler, C., F. Nolle, J. Mischo, T. Faidt, S. Grandthyll, N. Thewes, P. Jung, M. Koch, F. Müller, M. Bischoff, et al., "Strength of bacterial adhesion on nanostructured surfaces quantified by substrate morphometry", Nanoscale, vol. 11, pp. 19713, 2019.
Spengler, C., N. Thewes, F. Nolle, T. Faidt, N. Umanskaya, M. Hannig, M. Bischoff, and K. Jacobs, "Enhanced Adhesion of S. Mutans to Hydroxyapatite after Inoculation in Saliva", arXiv:1609.01137, 2016.
Spengler, C., N. Thewes, P. Jung, M. Bischoff, and K. Jacobs, "Determination of the nano-scaled contact area of staphylococcal cells", Nanoscale, pp. -, 2017.
Spengler, C., E. Maikranz, B. Glatz, M. Andreas Klatt, H. Heintz, M. Bischoff, L. Santen, A. Fery, and K. Jacobs, "The adhesion capability oef Staphylococcus aureus cells is heterogeneously distributed over the cell envelope", Soft Matter, pp. -, 2023.
Spengler, C., N. Thewes, N. Umanskaya, M. Hannig, F. Nolle, M. Bischoff, T. Faidt, and K. Jacobs, "Enhanced adhesion of Streptococcus mutans to hydroxyapatite after exposure to saliva", Journal of Molecular Recognition, vol. 30, pp. e2615, 2017.
Stanisz, H., S. Saul, C. S. L. Müller, R. Kappl, B. A. Niemeyer, T. Vogt, M. Hoth, A. Roesch, and I. Bogeski, "Inverse regulation of melanoma growth and migration by Orai1/STIM2-dependent calcium entry", Pigment Cell & Melanoma Research, vol. 27, pp. 442–453, 2014.
Stankevicins, L., N. Ecker, E. Terriac, P. Maiuri, R. Schoppmeyer, P. Vargas, A-M. Lennon-Duménil, M. Piel, B. Qu, M. Hoth, et al., "Deterministic actin waves as generators of cell polarization cues", PNAS, vol. 117, pp. 826, 2020.
Stapel, B., M. Kohlhaas, M. Ricke-Hoch, A. Haghikia, S. Erschow, J. Knuuti, JM. Silvola, A. Roivainen, A. Saraste, AG. Nickel, et al., "Low STAT3 expression sensitizes to toxic effects of β-adrenergic receptor stimulation in peripartum cardiomyopathy", European Heart Journal, vol. 38, pp. 349-361, 2017.
Stefanic, M., K. Ward, H. Tawfik, R. Seemann, V. Baulin, Y. Guo, J-B. Fleury, and C. Drouet, "Apatite nanoparticles strongly improve red blood cell cryopreservation by mediating trehalose delivery via enhanced membrane permeation", Biomaterials, vol. 140, pp. 138–149, 2017.
Steffen, P., C. Verdier, and C. Wagner, "Quantification of Depletion-Induced Adhesion of Red Blood Cells", Phys. Rev. Lett., vol. 110: American Physical Society, pp. 018102, 2013.
Stejerean-Todoran, I., and I. Bogeski, "Malignant currents: sodium leak channel NALCN propels prostate cancer aggressiveness", The EMBO Journal, vol. 42, pp. e114986, 2023.
Stejerean-Todoran, I., P. A. Gimotty, A. Watters, P. Brafford, C. Krepler, T. Godok, H. Li, Zñe. Bonilla del Rio, A. Zieseniss, Dörthe. M. Katschinski, et al., "A distinct pattern of growth and RAC1 signaling in melanoma brain metastasis cells", Neuro-Oncology, vol. 25, pp. 674-686, 09, 2023.
Sun, L., and R. A. Böckmann, "Membrane Phase Transition during Heating and Cooling: Molecular Insight into Reversible Melting", Europ. Biophys., vol. 47 (2), pp. 151-164, 2018.
Suzuki, Y., and M. J. Schmitt, "Redox diversity in ERAD-mediated protein retrotranslocation from the endoplasmic reticulum: a complex puzzle", Biological Chemistry, vol. 396, pp. 539–554, 2015.

 

 

 

 

 

 

 

 

 

 

 

 

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