Physical modeling of non-equilibrium processes in biological systems

Funding period 2021-2024

     

                 Cell Physics 2023, 10.-13. October 2023, in Saarbrücken 

                   in conjunction with the Annual Meeting of the DGZ 2023

                                                         

                         Movie about the Center for Biophysics (ZBP)

                               Public Outreach Article in "Scientia"

 

Announcements:

SFB 1027 Seminar

Tue, 30/04/2024 - 14:00
,
Campus SB, Building E2 6, Room E04

Prof. Dr. Abdou Rachid Thiam
(
Host: Prof. Dr. Bianca Schrul
)
Ecole Normale Supérieure de Paris

Crafting the lipid droplet proteome

Lipid droplets play crucial roles in maintaining cellular balance and are implicated in various disorders, such as hepatic, neuronal, and cardiovascular conditions. Their formation begins in the endoplasmic reticulum through the phase separation of neutral lipids synthesized within the bilayer membrane. These nascent lipid droplets then mature into spherical structures within the cytoplasm, often maintaining connections with the endoplasmic reticulum. Consequently, lipid droplets emerge as intracellular emulsion droplets encapsulating neutral lipids and enveloped by a phospholipid monolayer. Proteins embedded within this phospholipid monolayer regulate the majority of lipid droplets' biological functions. Dysregulation of lipid biogenesis and the proteome is a hallmark of various diseases, leading to numerous pathologies.

Therefore, understanding the modulation of the lipid droplet proteome composition is crucial for comprehending its involvement in diverse cellular processes and disease states. Proteins primarily access lipid droplets through two pathways: the cytosol and the endoplasmic reticulum, known as CYTOLD and ERTOLD proteins, respectively. However, the mechanisms directing proteins to the lipid droplet surface from the endoplasmic reticulum remain much more unclear. In this context, I will discuss our latest research findings on the mechanisms guiding protein targeting to the lipid droplet surface.

15:00: Coffee Break

15:15: Rehani Perera (C9, AG Schrul): Novel insight into the structural rearrangement of hairpin proteins during ER-to-LD partitioning

15:30: Anna Burgstaller (AG Staufer): 3D artificial lymph nodes to study activation dynamics of T-cells

Online Link: click here

SFB 1027 Seminar

Tue, 14/05/2024 - 14:00
,
Campus SB, E2 6, E04

Dr. Michael Lienemann
(
Host: Dr. Hendrik Hähl
)
VTT Technical Research Centre of Finland Ltd.

Enzymatic and microbial electrosynthesis for the conversion of carbon dioxide into food supplements and commodity chemicals

Petroleum-based commodities and food ingredients are predominantly produced by chemical synthesis and intensive agriculture, respectively, but are regarded unsustainable owing to their consumption of fossilized carbon as well as their significant environmental footprints determined by, e.g., emission of greenhouse gasses, land degradation and loss of biodiversity. As opposed to conventional processes, bioelectrosynthesis of food ingredients and chemical feedstocks can be performed in bioreactors that have a comparably small land footprint, can be operated year-round on barren land and are compatible with renewable energy and CO2 as a carbon feedstock. Bioelectrosynthetic CO2 conversions have been demonstrated with various biological systems including, e.g., reductase enzymes immobilized on submerged inorganic electrodes as well as autotrophic bacteria capable of oxidizing electrolytically generated hydrogen. The desirable conditions at which chemical syntheses are performed differ strongly from those under which biocatalysts have naturally evolved, e.g., in terms of temperature and substrate concentrations. In order to maximise their suitability for technical applications, ideal biocatalyst candidates need to be isolated, screened, characterised under conditions relevant to the desired technical applications and engineered towards improved performance.

In this lecture, recent advancements in the mechanistic understanding of enzymatic CO2 reduction as well as application and genetic engineering of Knallgas bacteria for electrocatalytic CO2 conversions will be presented. These include the mutational analysis of CO2 reduction by a selenocysteine-containing formate dehydrogenase as well as a comparative analysis of microbial CO2 conversion to beta-alanine, lactic acid and protein-rich biomass by electro- and gas fermentation. The presented findings support the development of more efficient enzymes and microbes for the production of edible microbial biomass and chemicals from CO2.

15:00: Coffee Break

15:15: t.b.a.

15:30: t.b.a.

Online Link: t.b.a.

SFB 1027 Seminar

Tue, 28/05/2024 - 14:00
,
Campus SB, Building E2 6, Room E04

Prof. Dr. Sabine Klapp
(
Host: Prof. Dr. Heiko Rieger
)
TU Berlin

t.b.a.

t.b.a.

 

 

 

 

 

 

 

 

 

 

 

 

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